PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00655
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 310aa    MW: 34713.2 Da    PI: 9.007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00655genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.8e-092371254
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +  +  rE+ RR+++N+ f eL  +l ++     +K++Ka+iL+ +v+ +k+L
  AA26G00655 23 KSQKAGREKLRREKLNEHFLELGNVLDPD----RPKNDKATILTDTVQLLKEL 71
                5566779******************9997....79***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.2682171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-122186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-112192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.23E-72275No hitNo description
PfamPF000101.0E-62371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-62777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGVKRIKGSV FAEGEVMDIS ARKSQKAGRE KLRREKLNEH FLELGNVLDP DRPKNDKATI  60
LTDTVQLLKE LTSEVTKLKS EYIALTDESR EVHIYPFLSK LTQEKNDLRE EKTSLKSDIE  120
NLNLQYQQRL RAMSPWGAAM DHTVMMAPPP SFPYPMPMAM PPGSIPMHPS MPSFTYYGNQ  180
NPSMIQAPCP TYMPYIPPNT IVEQHSVHIP QNPQTGNRSR EPRTKLSRES RAEKAEDSNE  240
VATQLELKTP GSTSDKDTLQ KPEKSKRCKR NSNNSIEESS HSSKCSSSPS VRDNSSSSSV  300
AGGPKPDDAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001030729.11e-164transcription factor bHLH121
SwissprotQ9LT231e-166BH121_ARATH; Transcription factor bHLH121
TrEMBLB9DHF51e-164B9DHF5_ARATH; AT3G19860 protein
STRINGAT3G19860.21e-163(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.21e-153bHLH family protein